'Flow Notes' is actually a nicely drawn flowchart of all of Wing Commander Prophecy's missions, showing how they connect to one another. I'm betting this was Captain Johnny's work -- I get the feeling he was pretty handy with Visio.
These updates are thanks to John "Captain Johnny" Guentzel, who provided several CD image archives of material used by the Wing Commander Prophecy development team!
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Date: November 17, 1997