For now when this happens, just submit the blank orders. "One Day" this will be one of the few remaining bugs and I'll focus on it and ask you to point these situations out, but for now there are so many other things that either could go wrong or need coding... I'm not going to worry about false positives.My two ships Violent Breeze and Talon supposedly need orders, yet there is no option too.
That said, if ever you think that the orders available to you are wrong or you aren't offered an order when you should be, that is immediately noteworthy. A blank order when a blank order is correct can for now be ignored and just submitted.
In this case, QuailPilot, I assume that a blank order does make sense?